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    Peer-Reviewed Journals

  • Paul, D., Bridges, S., Burgess, S. C., Dandass, Y., & Lawrence, M. L. (Sep 2010). Complete Genome and Comparative Analysis of the Chemolithoautotrophic Bacterium Oligotropha Carboxidovorans OM5. BMC Genomics, 11, 511.
  • Paul, D., Austin, F. W., Arick, T., Bridges, S., Burgess, S. C., Dandass, Y., & Lawrence, M. L. (Oct 2010). Genome Sequence of the Solvent-producing Bacterium Clostridium Carboxidivorans Strain P7T. Journal of Bacteriol, 192(20), 5554-5555.
  • Batchu, R., Dandass, Y., & Skjellum, A. (Oct 2004). MPI/FT: A Model-based Approach to Low-overhead Fault-tolerant Message-passing Middleware. Cluster Computing, 7(4), 303-315.
  • Cantrell, G., Dampier, D., Dandass, Y., & Niu, N. (Mar 2012). Research Toward a Partially-automated, and Crime Specific Digital Triage Process Model. Computer and Information Science Journal, Toronto, Ontario, Canada, 5(2), 29-38.
  • Florez-Larrahondo, G., Liu, Z., Dandass, Y., Bridges, S., & Vaughn, R. (Mar 2008). Integrating Intelligent Anomaly Detection Agents into Distributed Monitoring Systems. Journal of Information Assurance and Security (JIAS), 1(1), 59-77.
  • Florez-Larrahondo, G., Liu, Z., Dandass, Y., Bridges, S., & Vaughn, R. (Mar 2006). Intrusion Detection Using Text Processing Techniques with a Binary-Weighted Cosine Metric. Journal of Information Assurance and Security, 1, 59-77.
  • Dandass, Y. (Jun 2008). An Empirical Analysis of Disk Sector Hashes for Data Carving. Journal of Digital Forensics Practice, 2(2).
  • Vickery, R., Cedilnik, A., Martin, J. P., Dandass, Y., Moorhead, R. J.,, Clarke, J., & Adams, P. (Jun 2006). Web-Based High Performance Remote Visualization. Journal of Physics: Computer Series 46, SciDAC 2006, Denver, CO, 46, 0.
  • Dandass, Y. (Jan 2008). Teaching Application Implementation on FPGAs to Computer Science and Software Engineering Students. Computers in Education Journal, 18(1).
  • Duy, L., Vaughn, R., & Dandass, Y. (Jan 2007). Developments and Challenges of Internet Development in Vietnam - A General Perspective. CrossTalk: The Journal of Defense Software Engineering, 1(20), 16-19.
  • Li, W., Vaughn, R., & Dandass, Y. (Jan 2006). An Approach to Model Network Exploitations Using Exploitation Graphs. Simulation: Transactions of the Society for Modeling and Simulation International, 82(8), 523-541.
  • Skjellum, A., Kanevsky, A., Dandass, Y., Watts, J., Paavola, S., Cottel, D., Henley, G., Hebert, L.S., Cui, Z., & Rounbehler, A. (Dec 2004). The Real-Time Message Passing Interface. Concurrency and Computation: Practice and Experience, 16.
  • Paul, D., Bridges, S., Burgess, S.C., Dandass, Y., & Lawrence, M.L. (Aug 2008). Genome Sequence of the Chemolithoautotrophic Bacterium Oligotropha Carboxidovorans OM5. Journal of Bacteriology, 190(15), 5531-5532.
  • Sanders, W. S., Wang, N., Bridges, S., Dandass, Y., McCarthy, F.M., Nanduri, B., Lawrence, M.L., & Burgess, S. (Apr 2011). The Proteogenomic Mapping Tool. BMC Bioinformatics, 12(1), 115. [Document]
  • Dandass, Y., Burgess, S.C., Lawrence, M., & Bridges, S. (Apr 2008). Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research. BMC Bioinformatics, 9(197).


  • Peer-Reviewed Conference Papers

  • Dandass, Y. (Sep 2009). A Protocol for Realtime Communication for FPGA Clusters Using Multigigabit Transceivers. 2009 International Conference on Parallel and Distributed Computing and Communication Systems (PDCCS-2009), Louisville, KY.
  • Dandass, Y., Abbott, B., Bapty, T., Skjellum, A., Summey, C., & Yuan, H. (Sep 2003). Evolution of the Milieu Approach for Software Development for the Polymorphous Computing Architecture Program. 7th Annual Workshop on High Performance Embedded Computing, Massachusetts.
  • Birov, L., Prokofiev, A., Bartenev, Y., Vargin, A., Purkayastha, A., Skjellum, A., Dandass, Y., Erzunov, V., Shanikova, E., Ovechkin, V., Bangalore, P. V., Shuvalov, E., Frolova, N., Egorov, S., & Orlov, S. (Sep 1999). The Parallel Mathematical Libraries Project (PMLP): Overview, Design Innovations and Preliminary Results. Proceedings of the 5th International Conference on Parallel Computing Technologies, St. Petersburg, Russia.
  • Morris, T., Vaughn, R., & Dandass, Y. (Oct 2011). A Testbed for SCADA Control System Cybersecurity Research and Pedagogy. Proceedings of The 7th Annual ACM Cyber Secruity and Information Intelligence Research Workshop (CSIIRW)., The 7th Annual ACM Cyber Secruity and Information Intelligence Research Workshop (CSIIRW)/Oak Ridge, TN: ACM. [Abstract][Document Site]
  • Morris, T., Srivastava, A., Abdelwahed, S., Vaughn, R., & Dandass, Y. (Oct 2009). Engineering Future Cyber-Physical Energy Systems: Challenges, Research Needs, and Roadmap. Proceedings of the 2009 North American Power Symposium, Starkville, MS: IEEE. [Abstract][Document Site]
  • Wooley, B., Dandass, Y., & Bridges, S. (Nov 1998). Scalable Knowledge Discovery from Oceanographic Data. Proceedings of Artificial Neural Networks in Engineering Conference (ANNIE 1998), St. Louis, MO.
  • Wooley, B., Dandass, Y., Bridges, S., Hodges, J., & Skjellum, A. (Nov 1998). Scalable Knowledge Discovery from Oceanographic Data. Proceedings of the Conference on Artificial Neural Networks in Engineering (ANNIE '98), St. Louis, MO.
  • Dandass, Y. (May 2003). A Genetic Algorithm for Scheduling Acyclic Digraphs in the Presence of Communication Contention. Proceedings of the 17th Annual International Symposium on High Performance Computing Systems and Applications, Sherbrooke, Canada.
  • Batchu, R., Neelamegam, J., Cui, Z., Beddhu, M., Skjellum, A., Dandass, Y., & Apte, M. (May 2001). MPI/FT: Architecture and Taxonomies for Fault-Tolerant, Message-Passing Middleware for Performance-Portable Parallel Computing. Proceedings of the IEEE International Symposium on Cluster Computing and the Grid, Brisbane, Austrailia.
  • Dandass, Y. (Mar 2012). PCI Probe: A Tool for Testing PCIe Peripheral Devices in 64-bit Windows 7. ISCA 27th International Conference on Computers and Their Applications (CATA-2012), , Las Vegas, NV.
  • Dandass, Y. (Mar 2012). A Low Occupancy Study of Artificial Neural Networks on GPUs. ISCA 27th International Conference on Computers and Their Applications (CATA-2012),, Las Vegas, NV.
  • Dandass, Y., & Morris, T. (Mar 2012). PCI Probe: A Tool for Testing PCIe Peripheral Devices in 64-bit Windows 7. Proceedings of the 27th International Conference on Computers and Their Applications (CATA-2012), ISCA 27th International Conference on Computers and Their Applications (CATA-2012)/Las Vegas, NV. [Abstract]
  • Kondi, S.A., & Dandass, Y. (Mar 2006). Scanning Workstation Memory for Malicious Codes Using Dedicated Coprocessors. Proceedings of the 44th ACM Southeast Conference, Melbourne, FL.
  • Birov, L., Bartenev, Y., Vargin, A., Purkayastha, A., Skjellum, A., Dandass, Y., & Bangalore, P. V. (Mar 1999). The Parallel Mathematical Libraries Project (PMLP) - A Next Generation Scalable, Sparse, Object-Oriented, Mathematical Library Suite. Proceedings of the 9th SIAM Conference on Parallel Processing for Scientific Computing, San Antonio, TX.
  • Dandass, Y. (Mar 1999). A Component Object Model (COM) Binding for MPI. Proceedings of the 3rd MPI Developers and Users Conference, Atlanta, GA.
  • Vickery, R., Cedilnik, A., Martin, J. P., Fowler, J. E., Moorhead, R. J.,, Dandass, Y., Adams, P., & Clarke, J. (Jun 2007). Web-Based High Performance Remote Visualization. Proceedings of the HPCMP Users Group Conference, Pittsburgh, PA.
  • Dandass, Y. (Jun 2004). Genetic List Scheduling for Soft Real-Time Parallel Applications. Proceedings of the 2004 Congress on Evolutionary Computing, Portland, OR.
  • Dandass, Y. (Jul 2011). A Protocol for Realtime Switched Communication in FPGA Clusters. 2011 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'11), Las Vegas, Nevada.
  • Holland, W., & Dandass, Y. (Jul 2008). Optimizing Pipelining in HDL Generated Automatically from C Source Codes. International Conference on Engineering of Reconfigurable Systems and Algorithms (ERSA 08), Las Vegas, Nevada.
  • Dandass, Y., & Budge, A.C. (Jul 2006). Comparison of Genetic Representation Schemes for Scheduling Soft Real-Time Parallel Applications. Proceedings of the ACM Genetic and Evolutionary Computation Conference (GECCO-2006), Seattle, WA.
  • Morris, T., Vaughn, R., & Dandass, Y. (Jan 2013). Deterministic Intrusion Detection Rules for MODBUS Protocols. Proceedings of the 46th IEEE Hawaii International Conference on System Sciences (HICSS 46), Grand Wailea, Maui, HI: IEEE.
  • Morris, T., Vaughn, R., & Dandass, Y. (Jan 2012). A Retrofit Network Intrusion Detection System for MODBUS RTU and ASCII Industrial Control Systems. Proceedings of the 45th Hawaii International Conference on System Sciences, Maui, HI: IEEE. [Abstract]
  • Collange, S., Dandass, Y., Daumas, M., & Defour, D. (Jan 2009). Using Graphics Processors for Parallelizing Hash-based Data Carving. Proceedings of the 42nd Annual Hawaii International Conference on System Sciences (HICSS'09), Big Island, Hawaii.
  • Dandass, Y. (Jan 2008). Using FPGAs to Parallelize Dictionary Attacks for Password Cracking. Proceedings of the 41st Annual Hawaii International Conference on System Sciences (HICSS'08), Big Island, HI.
  • Dandass, Y. (Jan 2007). Hardware-assisted Scanning for Signature Patterns in Image File Fragments. In Proceedings of the 40th Annual Hawaii International Conference on System Sciences (HICSS07), Big Island, Hawaii.


  • Book or Book Chapter

  • Dandass, Y. (Jul 2010). Accelerating String Set Matching for Bioinformatics Using FPGA Hardware. In Bertil Schmidt (Eds.), Bioinformatics: High Performance Parallel Computer Architectures, Baco Raton, FL: CRC Press (Taylor & Francis Group).


  • Non-Refereed Conference Papers

  • Morris, T., Abdelwahed, S., Srivastava, A., Vaughn, R., & Dandass, Y. (Jun 2009). Secure and Reliable Cyber Physical Systems. National Workshop on new research directions for future Cyber-Physical Energy Systems, Baltimore, Maryland.


  • Professional Presentations

  • Dandass, Y. (May 2008). Using FPGAs to Accelerate Trans-disciplinary Research. , University of Perpignan Via Domitia, France.
  • Dandass, Y. (Mar 2008). Using FPGAs to Accelerate Bioinformatics Computing. Digital Biology Learning Community meeting sponsored by the Institute of Digital Biology, Mississippi State University.